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Adaptive model-guided protein evolution with sparse data optimizes compact eukaryotic genome editors
S Wan, J Gold, P Vure, et al.
Nature Biotechnology, 2026
[Paper]
Target sequence-conditioned design of peptide binders using masked language modeling
LT Chen, Z Quinn, M Dumas, …, P Vure, et al.
Nature Biotechnology, 2025
[Paper]
DPAC: Prediction and design of protein-DNA interactions via sequence-based contrastive learning
LT Chen, R Pulugurta, P Vure, P Chatterjee
bioRxiv, 2025
[Paper]
FusOn-pLM: a fusion oncoprotein-specific language model via adjusted rate masking
S Vincoff, S Goel, K Kholina, R Pulugurta, P Vure, P Chatterjee
Nature Communications, 2025
[Paper]
De novo design of peptide binders to conformationally diverse targets with contrastive language modeling
S Bhat, K Palepu, L Hong, …, P Vure, et al.
Science Advances, 2025
[Paper]
PepDoRA: a unified peptide language model via weight-decomposed low-rank adaptation
L Wang, R Pulugurta, P Vure, Y Zhang, A Pal, P Chatterjee
arXiv preprint, 2024
[Paper]
AMP-Diffusion: integrating latent diffusion with protein language models for antimicrobial peptide generation
T Chen, P Vure, R Pulugurta, P Chatterjee
bioRxiv, 2024
[Paper]
Engineered immunogens to elicit antibodies against conserved coronavirus epitopes
AB Kapingidza, DJ Marston, C Harris, …, P Vure, et al.
Nature Communications, 2023
[Paper]